Effect of soil fumigation with vapam on the dynamics of soil microflora and their related biochemical activity

Summary Fungal propagules, in general, were drastically reduced in vapam amended soils. The toxicant from 250 to 1000 ppm was lethal toFusarium spp. Only in the early part of the experiment, higher concentrations of vapam appreciably reduced the population of bacteria and actinomycetes, though later on, their population gradually increased. The numbers of Azotobacter in soil amended with 125, 250 and 500 ppm did not alter appreciably, but their population in treated soils increased over the check on the 45th day. All concentrations of vapam lowered the population of Rhizobia.Vapam produced inhibitory effect on soil nitrification, inhibition period varying with the amount of chemical applied initially. Vapam from 125 to 500 ppm stimulated the ammonification process, while its higher concentration (1000 ppm) produced detrimental effect for 15 days. The toxicant increased CO₂ production for first 32 days.Results suggest that extraordinary success of vapam in controlling soil-borne infections of Pythium and Rhizoctonia was not entirely due to its fungicidal action. Partly it was also due to an increase in the population of known antagonists of these pathogens in fumigated soils.     

The Accidental Ally: Nucleosome Barriers Can Accelerate Cohesin-Mediated Loop Formation in Chromatin

An important question in the context of the three-dimensional organization of chromosomes is the mechanism of formation of large loops between distant basepairs. Recent experiments suggest that the formation of loops might be mediated by loop extrusion factor proteins such as cohesin. Experiments on cohesin have shown that cohesins walk diffusively on the DNA and that nucleosomes act as obstacles to the diffusion, lowering the permeability and hence reducing the effective diffusion constant. An estimation of the times required to form the loops of typical sizes seen in Hi-C experiments using these low-effective-diffusion constants leads to times that are unphysically large. The puzzle then is the following: how does a cohesin molecule diffusing on the DNA backbone achieve speeds necessary to form the large loops seen in experiments? We propose a simple answer to this puzzle and show that although at low densities, nucleosomes act as barriers to cohesin diffusion, beyond a certain concentration they can reduce loop formation times because of a subtle interplay between the nucleosome size and the mean linker length. This effect is further enhanced on considering stochastic binding kinetics of nucleosomes on the DNA backbone and leads to predictions of lower loop formation times than might be expected from a naive obstacle picture of nucleosomes.     

Lysosomal Acid Hydrolases in Developing Huml Brain Regions

beta-D-Glucosidase, beta-D-glucosaminidase, acid phosphatase, and beta-D-galactosidase were monitored in the human foetal brain at different gestational periods. Glucosidase specific activity in all brain regions exhibits two peaks, at 8 g and 32 g foetal weights. Acid phosphatase exhibits very high specific activity in all brain regions at 5 g, but the cerebellar activity forms a peak at 220 g foetal weight, the midbrain at 135 g, and the spinal activity at 760 g. beta-D-Glucosaminidase has a peak at 220 g and 660 g in the midbrain, and beta-D-galactosidase specific activity is highest in the cortex and cerebellum in late gestation (neuronal differentiation phase). The midbrain medulla and the spinal cord show peak activity at 8 g and 220 g foetal weight. The results suggest an inter- and intraregional heterogeneity of acquisition for these enzymes in human brain ontogeny.